core.init: Rosetta version ce02443d455994def668b63455fd7977e63f26b1 2016-04-09 10:17:58 -0700 from https://github.com/RosettaCommons/main.git
core.init: command: condor_exec.exe -seed_offset 41 -database /home/rosie/rosie/rosie.back/data/antibody/rosetta_database -s model.pdb -constraints:cst_file cter_constraint -scorefile score.sf -multiple_processes_writing_to_one_directory -ex1 -ex2 -antibody::remodel perturb_kic -antibody::snugfit true -antibody::refine refine_kic -antibody::cter_insert false -antibody::flank_residue_min true -antibody::h3_filter true -antibody:constrain_cter -antibody::bad_nter false -antibody::h3_filter_tolerance 3 -nstruct 2048 -mpi_tracer_to_file /home/rosie/rosie/rosie.back/Jobs/22185/output/logs/.model_h3_loop.mpi.log -scorefile score-h3-loop-modeling.sf
core.init: 'RNG device' seed mode, using '/dev/urandom', seed=-388285103 seed_offset=41 real_seed=-388285062
core.init.random: RandomGenerator:init: Normal mode, seed=-388285062 RG_type=mt19937
protocols.antibody.AntibodyModelerProtocol: Setting Up defaults..........
protocols.antibody.AntibodyModelerProtocol: Start Reading and Setting Options ...
protocols.antibody.AntibodyModelerProtocol: Finish Reading and Setting Options !!!
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2014
core.scoring.etable: Starting energy table calculation
core.scoring.etable: smooth_etable: changing atr/rep split to bottom of energy well
core.scoring.etable: smooth_etable: spline smoothing lj etables (maxdis = 6)
core.scoring.etable: smooth_etable: spline smoothing solvation etables (max_dis = 6)
core.scoring.etable: Finished calculating energy tables.
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/sp2_elec_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/rama/Rama_smooth_dyn.dat_ss_6.4
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_n
basic.io.database: Database file opened: scoring/score_functions/P_AA_pp/P_AA_pp
basic.io.database: Database file opened: scoring/score_functions/PairEPotential/pdb_pair_stats_fine
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
core.scoring.ScoreFunctionFactory: SCOREFUNCTION: talaris2014
protocols.antibody: ////////////////////////////////////////////////////////////////////////////////
protocols.antibody: ///
protocols.antibody: ///                     Rosetta 3 Antibody Modeler                           ///
protocols.antibody: ///                                                                          ///
protocols.antibody: ///  camelid              : 0
protocols.antibody: ///
protocols.antibody: /// ******  model_h3  :  1
protocols.antibody: ///         h3_perturb_type     = 'perturb_kic'
protocols.antibody: ///         cter_insert         = 0
protocols.antibody: ///         h3_filter           = 1
protocols.antibody: ///
protocols.antibody: /// ******  snugfit   :  1
protocols.antibody: ///         LH_repulsive_ramp   = 1
protocols.antibody: ///
protocols.antibody: /// ******  refine_h3 :  1
protocols.antibody: ///         h3_refine_type      = 'refine_kic'
protocols.antibody: ///         h3_filter           = 1
protocols.antibody: ///         h3_filter_tolerance = 3
protocols.antibody: ///
protocols.antibody: ////////////////////////////////////////////////////////////////////////////////
protocols.antibody: 
protocols.jd2.PDBJobInputter: Instantiate PDBJobInputter
protocols.jd2.PDBJobInputter: PDBJobInputter::fill_jobs
protocols.jd2.PDBJobInputter: pushed model.pdb nstruct indices 1 - 2048
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
protocols.jd2.PDBJobInputter: PDBJobInputter::pose_from_job
protocols.jd2.PDBJobInputter: filling pose from PDB model.pdb
core.chemical.ResidueTypeSet: Finished initializing fa_standard residue type set.  Created 387 residue types
core.chemical.ResidueTypeSet: Total time to initialize 0.65 seconds.
core.import_pose.import_pose: File: model.pdb not found!
Error: ERROR: Exception caught by JobDistributor while trying to get pose from job 'model_0068'
Error: 

[ERROR] EXCN_utility_exit has been thrown from: src/core/import_pose/import_pose.cc line: 255
ERROR: Cannot open file "model.pdb"


Error: Treating failure as bad input; canceling similar jobs
Warning: A job reported bad input, but was not the first input of its type!  You should figure out why the first one passed if later ones failed!
protocols.jd2.FileSystemJobDistributor: job failed, reporting bad input; other jobs of same input will be canceled: model_0068
protocols.jd2.JobDistributor: no more batches to process... 
protocols.jd2.JobDistributor: 2048 jobs considered, 1 jobs attempted in 2 seconds
caught exception 1 jobs failed; check output for error messages