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rosetta.core.init._core_init_ module

Functions

def check_deprecated_flags(

...)

check_deprecated_flags() -> None : Check for deprecated flags and utility exit if any deprecated flags are detected

C++ signature : void check_deprecated_flags()

def check_score_function_sanity(

...)

check_score_function_sanity( (str)scorefxn_key [, (bool)warn_only=False]) -> None : Check if a score function is requested with incompatible option flags

C++ signature : void check_score_function_sanity(std::string [,bool=False])

def init(

...)

init( (vector1_string)args) -> None : wrapper for core system Init

C++ signature :
    void init(utility::vector1<std::string, std::allocator<std::string> >)

init( (int)argc, (object)argv) -> None : Init basic core systems: options system, random system.

C++ signature :
    void init(int,char**)

def init_beta_correction(

...)

init_beta_correction() -> None : Initialize the -beta score function

C++ signature : void init_beta_correction()

def init_correct_correction(

...)

init_correct_correction() -> None : Initialize the -correct correction

C++ signature : void init_correct_correction()

def init_crystal_refinement_correction(

...)

init_crystal_refinement_correction() -> None : Initialize the crystal refinement correction

C++ signature : void init_crystal_refinement_correction()

def init_dna_correction(

...)

init_dna_correction() -> None : Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present

C++ signature : void init_dna_correction()

def init_facts_correction(

...)

init_facts_correction() -> None : Initialize the FACTS correction

C++ signature : void init_facts_correction()

def init_hbond_sp2_correction(

...)

init_hbond_sp2_correction() -> None : Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default.

C++ signature : void init_hbond_sp2_correction()

def init_mpi(

...)

init_mpi( (int)argc, (object)argv) -> None : Initialize MPI (message passing interface) for parallel applications

C++ signature : void init_mpi(int,char**)

def init_nonideal_correction(

...)

init_nonideal_correction() -> None : Initialize nonideal bond geometry correction

C++ signature : void init_nonideal_correction()

def init_options(

...)

init_options( (int)argc, (object)argv) -> None : Initialize the option system, which manages command line options

C++ signature : void init_options(int,char**)

def init_paths(

...)

init_paths() -> None : Setup basic search paths

C++ signature : void init_paths()

def init_profiling(

...)

init_profiling() -> None : Profiling measures execution performance

C++ signature : void init_profiling()

def init_random_generators(

...)

init_random_generators( (int)start_seed, (str)RGtype) -> None : Initialize random generator systems (and send debug io to tracer with seed/mode info).

C++ signature : void init_random_generators(int,std::string)

def init_random_number_generators(

...)

init_random_number_generators() -> None : Initalize random number generators

C++ signature : void init_random_number_generators()

def init_resources(

...)

init_resources() -> None : Set up system resources

C++ signature : void init_resources()

def init_restore_score12prime(

...)

init_restore_score12prime() -> None : restore the the score function to the Score12prime version

C++ signature : void init_restore_score12prime()

def init_revert_to_pre_talaris_2013_mistake(

...)

init_revert_to_pre_talaris_2013_mistake() -> None : Initialize the "revert to before Talaris2013" mistake

C++ signature : void init_revert_to_pre_talaris_2013_mistake()

def init_score_function_corrections(

...)

init_score_function_corrections() -> None : Initialize the latest and greatest score function parameters

C++ signature : void init_score_function_corrections()

def init_shapovalov_lib_fixes_enable_correction(

...)

init_shapovalov_lib_fixes_enable_correction() -> None : Initialize the -shapovalov_lib_fixes_enable correction

C++ signature : void init_shapovalov_lib_fixes_enable_correction()

def init_source_revision(

...)

init_source_revision() -> None : Choose to output source version control information?

C++ signature : void init_source_revision()

def init_tracers(

...)

init_tracers() -> None : Tracers control output to std::cout and std::cerr

C++ signature : void init_tracers()

def locate_rosetta_database(

...)

locate_rosetta_database() -> None : Locate rosetta_database

C++ signature : void locate_rosetta_database()

def random_delay(

...)

random_delay() -> None : Choose to randomly delay execution to desyncronize parallel execution

C++ signature : void random_delay()

def report_application_command(

...)

report_application_command( (int)argc, (object)argv) -> None : Describe the application execution command

C++ signature : void report_application_command(int,char**)

def revert_to_pre_talaris_2013_defaults(

...)

revert_to_pre_talaris_2013_defaults() -> None : Reset a set of flags to their pre-talaris behavior

C++ signature : void revert_to_pre_talaris_2013_defaults()