rosetta.core.init._core_init_ module
Functions
def check_deprecated_flags(
...)
check_deprecated_flags() -> None : Check for deprecated flags and utility exit if any deprecated flags are detected
C++ signature : void check_deprecated_flags()
def check_score_function_sanity(
...)
check_score_function_sanity( (str)scorefxn_key [, (bool)warn_only=False]) -> None : Check if a score function is requested with incompatible option flags
C++ signature : void check_score_function_sanity(std::string [,bool=False])
def init(
...)
init( (vector1_string)args) -> None : wrapper for core system Init
C++ signature : void init(utility::vector1<std::string, std::allocator<std::string> >)
init( (int)argc, (object)argv) -> None : Init basic core systems: options system, random system.
C++ signature : void init(int,char**)
def init_beta_correction(
...)
init_beta_correction() -> None : Initialize the -beta score function
C++ signature : void init_beta_correction()
def init_correct_correction(
...)
init_correct_correction() -> None : Initialize the -correct correction
C++ signature : void init_correct_correction()
def init_crystal_refinement_correction(
...)
init_crystal_refinement_correction() -> None : Initialize the crystal refinement correction
C++ signature : void init_crystal_refinement_correction()
def init_dna_correction(
...)
init_dna_correction() -> None : Apply some DNA-specific mods that are still in testing phase; only if -corrections::newdna present
C++ signature : void init_dna_correction()
def init_facts_correction(
...)
init_facts_correction() -> None : Initialize the FACTS correction
C++ signature : void init_facts_correction()
def init_hbond_sp2_correction(
...)
init_hbond_sp2_correction() -> None : Initialize the hbond Sp2 correction Deprecated as Talaris2013 becomes default.
C++ signature : void init_hbond_sp2_correction()
def init_mpi(
...)
init_mpi( (int)argc, (object)argv) -> None : Initialize MPI (message passing interface) for parallel applications
C++ signature : void init_mpi(int,char**)
def init_nonideal_correction(
...)
init_nonideal_correction() -> None : Initialize nonideal bond geometry correction
C++ signature : void init_nonideal_correction()
def init_options(
...)
init_options( (int)argc, (object)argv) -> None : Initialize the option system, which manages command line options
C++ signature : void init_options(int,char**)
def init_paths(
...)
init_paths() -> None : Setup basic search paths
C++ signature : void init_paths()
def init_profiling(
...)
init_profiling() -> None : Profiling measures execution performance
C++ signature : void init_profiling()
def init_random_generators(
...)
init_random_generators( (int)start_seed, (str)RGtype) -> None : Initialize random generator systems (and send debug io to tracer with seed/mode info).
C++ signature : void init_random_generators(int,std::string)
def init_random_number_generators(
...)
init_random_number_generators() -> None : Initalize random number generators
C++ signature : void init_random_number_generators()
def init_resources(
...)
init_resources() -> None : Set up system resources
C++ signature : void init_resources()
def init_restore_score12prime(
...)
init_restore_score12prime() -> None : restore the the score function to the Score12prime version
C++ signature : void init_restore_score12prime()
def init_revert_to_pre_talaris_2013_mistake(
...)
init_revert_to_pre_talaris_2013_mistake() -> None : Initialize the "revert to before Talaris2013" mistake
C++ signature : void init_revert_to_pre_talaris_2013_mistake()
def init_score_function_corrections(
...)
init_score_function_corrections() -> None : Initialize the latest and greatest score function parameters
C++ signature : void init_score_function_corrections()
def init_shapovalov_lib_fixes_enable_correction(
...)
init_shapovalov_lib_fixes_enable_correction() -> None : Initialize the -shapovalov_lib_fixes_enable correction
C++ signature : void init_shapovalov_lib_fixes_enable_correction()
def init_source_revision(
...)
init_source_revision() -> None : Choose to output source version control information?
C++ signature : void init_source_revision()
def init_tracers(
...)
init_tracers() -> None : Tracers control output to std::cout and std::cerr
C++ signature : void init_tracers()
def locate_rosetta_database(
...)
locate_rosetta_database() -> None : Locate rosetta_database
C++ signature : void locate_rosetta_database()
def random_delay(
...)
random_delay() -> None : Choose to randomly delay execution to desyncronize parallel execution
C++ signature : void random_delay()
def report_application_command(
...)
report_application_command( (int)argc, (object)argv) -> None : Describe the application execution command
C++ signature : void report_application_command(int,char**)
def revert_to_pre_talaris_2013_defaults(
...)
revert_to_pre_talaris_2013_defaults() -> None : Reset a set of flags to their pre-talaris behavior
C++ signature : void revert_to_pre_talaris_2013_defaults()