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Department of Chemical & Biomolecular Engineering
and Program in Molecular & Computational Biophysics

Johns Hopkins University, Baltimore, Maryland 21218

Our lab vision is to employ and extend protein structure prediction methods to solve practical problems in biomolecular self-assembly and function.

In particular, we specialize in protein-protein docking, therapeutic antibodies, protein-solid surface interactions, and allostery. Rapid conformational search methods and accurate free energy functions have enabled unprecedented new abilities in structure prediction. We are pushing these techniques toward realistic biological and engineering problems and in the process developing additional methods capable of handling, for example, large proteins, proteins for which homology models must be used for docking, proteins which change conformation to affect function (allostery), and proteins which undergo conformational change upon binding.

Electronic Resources:
RosettaDock Server

RosettaAntibody Server (Beta release)

Allosteric Structures Database

RosettaDock Docking Software

Docking Decoys

News:
The lab had six papers published or accepted for publication in 2007! (see publications)

Dec 2007: Julian Rosenberg and J.D. Bagert win Technology Fellowships to work with our lab to develop Rosetta tutorial modules for ChemBE 606.

July 2007: Monica Berrondo receives a Ruth L. Kirschstein Graduate Fellowship from the NIH

May 2007: Eric Kim wins a Provost's Undergraduate Research Award

Jan 2007: Dave Masica wins a Genentech poster award at ICBE

Sept 2006: We received a five-year NIH R01 Grant on "Prediction of the Structure of Therapeutic Antibodies with their Antigens"


Prinicipal Investigator & Group Members
Jeffrey J. Gray
Email:jgray@jhu.edu
Office: 208 Maryland Hall
Lab: 204 Maryland Hall
Phone: (410) 516-5313
Fax: (410) 516-5510

Lab members (left to right): Monica Berrondo, David Masica, Aroop Sircar, Jeff Gray, Kosta Makrodimitris, Mike Daily, Ellie Glifort, Sid Chaudhury, Arvind Sivasubramanian, and Ryan Harrison

See also:

  • Lab members at Jeff's wedding, April 2006
  • Group Hike, Shenandoah National Park, July 2006
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    Contact Graylab Webmaster | Last Modified: 3/31/2007